Category Archives: marine science

UGA Skidaway Institute scientist stands atop the globe

 

UGA Skidaway Institute of Oceanography researcher Chris Marsay has stood on top of the world—literally.

Marsay arrived at the North Pole in early September and took part in the U.S .GEOTRACES Arctic Expedition on board the U.S. Coast Guard Cutter Healy, a polar icebreaker.

Marsay at the North Pole in front of the U.S. Coast Guard Cutter Healy.

Marsay at the North Pole in front of the U.S. Coast Guard Cutter Healy.

The project is part of an international, multiple icebreaker effort to conduct geochemical sampling of the Arctic Ocean. The cruise arrived at 90 degrees north on Sept. 5 in what is the first occupation of the North Pole by an unaccompanied U.S. surface ship—submarines usually follow ships below the ice. While at the pole, the Healy rendezvoused with the German ship conducting the German leg of the GEOTRACES Arctic program.

Marsay with his gear at the North Pole.

Marsay with his gear at the North Pole.

Marsay is working with UGA Skidaway Institute professor Cliff Buck and scientists from Florida State University and Rutgers University. The research team was funded by the National Science Foundation to collect samples from the atmosphere, precipitation and surface water from melt ponds during the cruise.

“Our research goals are to describe the chemistry of atmospheric deposition to the region and quantify flux rates,” Buck said. “These data will then be shared with the scientific community to better understand biogeochemical cycling of trace elements and isotopes in the Arctic Ocean.”

Diaz joins UGA Skidaway Institute faculty

Marine biogeochemist Julia Diaz has joined the faculty of the University of Georgia Skidaway Institute of Oceanography as an assistant professor.

OLYMPUS DIGITAL CAMERAOriginally from Alpharetta, Ga., Diaz was graduated summa cum laude from the University of Georgia with a B.S. in biology and went on to earn her Ph.D. in earth and atmospheric sciences from Georgia Tech. She conducted postdoctoral research at Harvard University and the Woods Hole Oceanographic Institution.

Diaz’s research examines how the chemistry and microbiology of the oceans shape each other and, ultimately, how this interaction affects ecosystem health from local to global scales. She is currently studying the chemical basis of coral bleaching, a devastating consequence of global warming which threatens coral reefs worldwide.

“I also study how microscopic plantlike organisms acquire the chemical nutrients they need to survive in extremely nutrient-poor areas of the ocean and how these processes may affect ecosystem structure and climate,” she said. “My research has taken me all over the world, from Antarctica to the Caribbean, and now I am very excited to explore new scientific questions along our beautiful coast and offshore waters.”

Joint summer course draws notice

The joint summer course taught partially at Skidaway Institute has received some attention.

Taught by Jim Nelson and Dana Savidge at Skidaway, and Mary Ann Moran at Sapelo Island, the new program was the featured, cover story in the most recent issue of the University of Georgia Magazine. (Click the image to access the article.)

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USG Chancellor Hank Huckaby featured a video produced on the project at the August Board of Regents meeting as part of his report to the board.

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Marine Extension pilots program to grow individual oysters off Georgia coast

By Kelly Simmons

UGA Marine Extension is poised to launch the state’s first oyster hatchery, bringing the popular shellfish back to the Georgia coast after more than 50 years, and diversifying the state’s aquaculture industry.

The shellfish research lab on Skidaway Island began piloting oyster growth last year, using funding from the Georgia Department of Natural Resources (DNR) to give wild spat—oyster seed—and advice to aquaculturists in the area who have DNR approval to farm and harvest in specific areas along the coastal rivers and tributaries. DNR funding also paid to outfit part of the shellfish laboratory to be used as a hatchery to hire a hatchery manager.hatchery_flyer-fpo-678x394

“We hope eventually to attract a commercial hatchery to supply large amounts of seed,” said Thomas Bliss, director of the Marine Extension Shellfish Research Laboratory on Skidaway Island. “We can focus here on research.”

So far, 10 growers have cultivated the seedlings, protected in mesh bags on racks in shallow water. The first full size single shell oysters are expected to be ready for harvest this fall.

By summer, some were already 1.75 inches long, about a quarter inch smaller than the legal size for commercial harvesting in Georgia, said Bliss. The survival rate was high—about 99 percent had survived so far.

John Pelli, who owns the Savannah Clam Co., was among the local aquaculturists who agreed to try raising oysters. On a windy but sunny day in March, he was on his skiff, moving his mesh bags of shells from one location to another. He hopes to produce about 300,000 oysters a year to supply retailers locally and across the state.

In the early 1900s, Georgia was the largest wild oyster producer in the country, harvesting more than eight million pounds of oyster meat in 1908. By the 1940s and 1950s, however, production declined significantly. In the 1960s, canneries built to process the native oysters had closed.

In the 1980s, marine extension again began to explore opportunities in aquaculture. Clams, which are easier to grow, were first. In 2013, Georgia clammers harvested more than 105,000 tons of clams, up from 54,000 tons just five years earlier and 4.2 tons in 1993.

Clams are much easier to grow because you can buy seed from other states. Georgia doesn’t allow oyster spat from outside the state because it could contain disease.

To grow the spat, Bliss and hatchery manager Justin Manley have to recreate the natural spawning process of oysters inside tanks of water. Once the larvae is formed it attaches to a small piece of shell in the tank. The baby oysters, called spat, can be transplanted to other areas to grow into adults. They may be harvested when they are two inches long.

This year, Bliss says they’ll produce about 100,000 to 200,000 seeds, or spat. By 2020, he hopes that will increase to five to eight million.

The payoff would be worth it. The 100,000-500,00 oysters grown in 2015 have an estimated dock value of $75,000. Five to eight million would bring in about $1.6 million.

“Everybody’s crazy about single oysters,” Pelli said. “People are willing to pay good money for them.”

UGA Marine Extension pilots new education programs that investigate sustainable oyster aquaculture

The University of Georgia Marine Extension is piloting a new program for visiting school groups in the fall of 2015. The overall project, funded by the Landings Landlovers Inc., will provide hands-on educational experiences for approximately 190 students and the general public in a unique setting.

The UGA MAREX Shellfish Research Laboratory has developed an oyster hatchery, the first in the state of Georgia, to support a growing oyster aquaculture industry. They have created a program that will expose participants to sustainable aquaculture practices and provide enrichment activities that emphasize the ecological and economic importance of oyster reef communities and the important role that oyster hatcheries play in the sustainability of this important shellfish species.

Skidaway Institute participates in worldwide ocean snapshot

Scientists at the University of Georgia Skidaway Institute of Oceanography joined researchers around the globe in a worldwide Ocean Sampling Day on Sunday, June 21, the summer solstice.

This was the second year Skidaway researchers have participated in the Ocean Sampling Day event. The first was conducted last year, also on the summer solstice. The event focuses on simultaneous sampling of microbes in ocean, coastal and Great Lakes waters.

This year, 191 marine research locations—from the Rothera Research Station in Antarctica to Göteborg University in Sweden—participated. The sampling program supports international missions to provide

“It’s a global effort to take a snapshot of microbes across the world’s oceans at the same time, on the same day, in this case, the summer solstice,” said Skidaway Institute professor Marc Frischer.

The Skidaway Institute team transfers a water sample from the Skidaway River during Ocean Sampling Day

The Skidaway Institute team transfers a water sample from the Skidaway River during Ocean Sampling Day

Frischer cited the significance of the project by describing microbes as the “engines of our planet” and said half the oxygen in the atmosphere is produced by microbes in the ocean.

Skidaway Institute scientists collected samples at two locations. One team collected and processed samples from the Skidaway River estuary immediately adjacent to the Skidaway Institute campus. That also served as part of an ongoing water-quality monitoring program Skidaway Institute has supported for more than 25 years. A second group teamed up with scientists from the National Oceanic and Atmospheric Administration Gray’s Reef National Marine Sanctuary and collected samples from Gray’s Reef. The 14,000-acre marine sanctuary is located about 17 miles off the Sapelo Island coast.

“We helped Gray’s Reef by collecting and processing their samples in the way they needed to be done,” Frischer said. “You really need a laboratory for that, and we were able to provide that.”

One goal of the global project is to note the commonalities and the differences among the microbial communities around the globe. Some of those differences were seen just in the samples collected at Gray’s Reef and at the Skidaway campus, two sites only 40 miles apart.

Grad student LaGina Frazier lowers a disc used to measure turbidity into the water off the UGA Skidaway Institute dock.

Grad student LaGina Frazier lowers a sensor into the water off the UGA Skidaway Institute dock.

“We generally observe a larger number of smaller organisms out in the ocean, which makes sense because they are adapting to a system with lower nutrients,” Frischer said. “We also saw a different kind of photosynthetic organisms since there is much more light available in the ocean compared to rather turbid waters in our estuary.”

Much of the fieldwork at both Skidaway Institute and Gray’s Reef was handled by undergraduate college students gaining research experience at Skidaway Institute this summer. These included students from UGA and Savannah State University’s Research Experience for Undergraduates program.

All samples and data were sent to Bremen, Germany, for DNA extraction and sequencing to ensure maximum comparability. The resulting data will be made publicly available as soon as quality checks are finished. These cumulative samples, related in time, space and environmental parameters, will provide insights into fundamental rules describing microbial diversity and function and contribute to the blue, or oceanic, economy through the identification of novel, ocean-derived biotechnologies.

Ocean Sampling Day was jointly coordinated by Jacobs University in Bremen, Germany, and the University of Oxford in the U.K. and is part of the European Union-funded Ocean of Tomorrow research project Micro B3.

“It is really important to have a global perspective,” Frischer said. “We are glad we can participate in what they are now calling “gigascience” where we are collecting a snapshot from all over the world. It is amazing!”

Additional information on the global Ocean Sampling Day project is available at www.microb3.eu/osd.

A video of Ocean Sampling Day is available on the Skidaway Institute YouTube Channel at:

https://www.youtube.com/watch?v=5c8JuzvLUH8

Harvey joins Skidaway Institute faculty

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Biological oceanographer Elizabeth Harvey has joined the faculty of the UGA Skidaway Institute of Oceanography as an assistant professor.

Harvey received her bachelor’s degree in marine science from the University of Maine and a master’s in environmental science from Western Washington University. She earned her doctorate in oceanography from the University of Rhode Island. Immediately prior to joining Skidaway Institute, she completed a post-doctoral fellowship at Woods Hole Oceanographic Institution.

Harvey’s research focus is on the mechanisms of mortality in the planktonic environment in the ocean and how that influences food web structure and biogeochemical cycling.

UGA Skidaway Institute produces informational video on black gill in Georgia shrimp

The UGA Skidaway Institute of Oceanography has produced an informational video to educate the public about black gill, a condition affecting Georgia shrimp, and the institute’s research into the problem.

Black gill is a mysterious condition affecting shrimp from Florida to North Carolina. A number of shrimpers have blamed black gill for their reduced harvests.

Almost nothing was known of the condition until the UGA Skidaway Institute began looking into the issue in early 2014. Since then, researchers have learned much about the condition, but much is still unknown. This video provides background on the condition and the results of the investigation thus far.

The video can be viewed below or accessed through the UGA Skidaway Institute Web site at http://www.skio.uga.edu.

The black gill research is funded by Georgia Sea Grant. The video was produced in cooperation with UGA Marine Extension, the university’s Office of Public Service and Outreach, Georgia Sea Grant and the Georgia Department of Natural Resources.

Save the Date for the 13th Annual Gray’s Reef Ocean Film Festival!

Gray’s Reef National Marine Sanctuary will present the Ocean Film Festival on Friday and Saturday, Jan. 29-30, 2016, at the Lucas Theatre and Trustees Theater in down Savannah.

“This year’s film festival is slated to be the best ever,” said Gray’s Reef’s Michelle Riley.

For the first time, the festival will include 3-D movies, including “Jean-Michel Cousteau’s Secret Ocean 3D.”

“When I was introduced to the new technology developed specifically for us, I immediately understood that this was a breakthrough in underwater filming that would allow us to capture extraordinary, never-before-seen images that I had never witnessed in my 69 years of diving,” Cousteau said.

The wonderful sports film, “The Current,” features people of all abilities who enjoy adaptive sports and shows participants scuba diving and ocean kayaking alongside whales and dolphins in exotic locations, including Bimini, the Bahamas, Mexico and Hawaii.

“Another film we will present is “The Crystal Labyrinth,” featuring cave diver and explorer Brian Kakuk,” Riley said.  “The film is a fascinating look at the Bahamas’ cave network.”

For additional information and a schedule of films, visit www.graysreefnmsf.org.

Scientists work to predict 22nd century look of the Georgia coast

The Georgia coast is characterized by a complex system of barrier islands, salt marshes, estuaries, tidal creeks and rivers. As the sea level rises over the next century, that picture will change. UGA Skidaway Institute of Oceanography scientist Clark Alexander is working on a project to predict how the coast may look 25, 50 and 100 years from now.

Predictions of sea level rise over the next century vary from the current rate of roughly 30 centimeters—about a foot—to as much as two meters—about 6 feet. Although scientists disagree on the ultimate height of the rise, they all agree that salty water is moving inland and will continue to do so for the foreseeable future, Alexander said. Here on the Georgia coast, islands will become smaller or disappear entirely; salt marshes will be inundated by the rising waters and migrate toward the uplands; and some low-lying uplands will become salt marshes.

To predict the extent of these changes, scientists are using the predictive Sea Level Affecting Marshes Model, or SLAMM, which was originally developed for the U.S. Fish and Wildlife Service.

SLAMM predicts the effects of future sea level rise based on two key inputs: an elevation mapping of the coastal zone and salinity profiles up the rivers and waterways. Salinity and elevation are two key factors that determine the type of plants, and thus habitat, that will be present at any particular location.

“As the sea level rises, the fresh water in rivers will be pushed further upstream,” Alexander said. “The brackish and salty water will also move up, and the salt marshes will expand.”

Funded by a Coastal Incentive Grant from the Georgia Department of Natural Resources Coastal Management Program, Alexander and his team have been studying the five key river systems along the coast and numerous salt marsh estuaries. Salinity along the coast is dominantly affected by river discharge into the estuaries, so the team has been conducting its surveys during both winter—high river flow—and the summer—low river flow—conditions.

“We start at the mouth of a river about an hour before high tide and then we follow that high tide up the river, mapping the surface salinity along the way,” Alexander said. “We find the maximum inshore intrusion of salinity at high tide during a spring tide. That is the location that defines the boundary between the brackish marshes and the freshwater marshes.”

Researcher Mike Robinson prepares the adjusts the salinity sensors, while fellow researcher LeeAnn DeLeo drives the boat.

Researcher Mike Robinson prepares the adjusts the salinity sensors, while fellow researcher LeeAnn DeLeo drives the boat.

In addition to tracking surface salinity, the researchers also stop periodically and measure the salinity throughout the water column to determine if what they measure at the surface is similar to what is present near the bottom. They lower a device that measures the water conductivity (which is related to salinity), temperature and depth from the surface to the bottom. Also equipped with GPS capability, the device automatically captures the location of every water column profile.

Researcher LeeAnn DeLeo lowers a CTD monitor through the water column.

Researcher LeeAnn DeLeo lowers a CTD monitor through the water column.

In many coastal regions, denser, saltier water tends to sink to the bottom and the lighter, fresher water remains near the surface. However, because of the energy produced by Georgia’s wide tidal range, the team found that most of the water on the Georgia coast is well mixed and doesn’t show up as layers.

The second part of the project is to fine-tune existing elevation data. Scientists have an extensive set of elevation information from airplane-mounted Light Detection And Ranging systems. LIDAR is usually very accurate, except in marshes, because it cannot see through the vegetation to the actual ground surface.

“You might be off by 30 centimeters or more, and in a low-lying, flat area like our coastal zone, that can make a big difference in predicting where the water will flood,” Alexander said.

The Skidaway Institute team is working with Georgia Southern University scientist Christine Hladik on a fix. By comparing LIDAR data with the true elevation in a particular area, Hladik observed that the LIDAR error varied according to the type of plants growing there. For example, if the area contained the dense, tall spartina, the error was large and, on average, a consistent number of centimeters. If the region was covered with a different, less-dense-growing salt marsh plant, like short spartina, the error was smaller but also consistent.

“She discovered that if you know what type of vegetation is covering a section of marshland, you can plug in the correction and come back with an accurate measure of the elevation,” Alexander said.

The research team observed the vegetation and measured the true ground level at 400 randomly selected points throughout coastal brackish and salt marshes in Georgia. That information and knowledge of plant types is being used to correct the existing marsh elevations.

The research team will complete one more set of river surveys before the project ends in September. Alexander hopes to obtain continued funding to use this newly acquired elevation and salinity data in a fresh SLAMM model run for the Georgia coast, using all the high-resolution data developed in this project.

“We should be able to look out as much as 100 years in the future and see where the different wetlands will be by then,” he said. “That way we can plan for marsh sustainability, retreat and sea level rise.”