Tag Archives: plankton

Scientific serendipity: Researchers make surprising finding on ocean’s ‘thin layers’

Sometimes scientists start out researching one subject, but along the way, they come across something else even more interesting. This is what happened to University of Georgia Skidaway Institute of Oceanography researcher Adam Greer in the summer of 2016 when Greer was a post-doctoral associate at the University of Southern Mississippi. That fortuitous event resulted in a paper recently published in the journal Limnology and Oceanography with Greer as the lead author.

Adam Greer 1 650pGreer and his fellow researchers were on a cruise in the northern Gulf of Mexico to study the effects of river input on biological processes. They came across a natural phenomenon called a thin layer. These are oceanographic features found all over the world where biomass collects into a narrow portion of the water column–less than five meters thick vertically–and can extend for several kilometers horizontally. They tend to occur in stratified shelf systems.

“Surprisingly, there are few published studies on thin layers in the northern Gulf of Mexico, which is heavily influenced by rivers and highly stratified during the summer,” Greer said. “Thin layers are important because they are trophic hot spots, where life tends to congregate, and predators and prey interact.”

However, Greer said, thin layers are very difficult to analyze because they occur within a restricted portion of the water column, and most conventional ocean sampling equipment will not detect their influence on different organisms.

Greer and his colleagues were better equipped than most to study the thin layer. Rather than laying out a grid and taking a series of water samples, they were equipped with an In Situ Ichthyoplankton Imaging System (ISIIS). This imaging system was towed behind their research vessel and undulated through the water column, producing a live feed of plankton images and oceanographic data. By studying the video, they were able to map the distributions of many different types of organisms in great detail. The thin layer was composed of large chains of phytoplankton called diatoms and gelatinous zooplankton called doliolids.

Thin Layer 2

A crewman launches the ISIIS.

“Although we expected many different organisms to aggregate within the layer, this was not the case,” Greer said. “The only organisms that were concentrated within the layer were gelatinous organisms called doliolids. Other organisms that we expected to see, such as copepods, chaetognaths and shrimp, tended to congregate near the surface just south of the thin layer.”

The researchers determined that the area south of the thin layer was influenced by a surface convergence – two water masses colliding and pushing water downward at a slow rate. They believe that many organisms with active swimming ability, such as shrimps and copepods, could stay within the surface convergence, while more passive swimmers, such as doliolids would follow the trajectory of the thin layer and diatoms.

Thin Layer 1

An image from the In Situ Ichthyoplankton Imaging System passing through the thin layer. The long, slender filaments are chains of diatoms. The larger, oval plankton are doliolids

Greer and his colleagues discovered several other characteristics of the thin layer they had not anticipated. There was a higher concentration of live phytoplankton than expected. As a result, the thin layer also had a high concentration of dissolved oxygen due to the photosynthetic activity. The zooplankton were also aggregated into distinct microhabitats with different oceanographic properties — such as temperature, salinity and light. The microhabitats also contained different types and abundances of food.

“For a lot of these organisms, if you took the average abundance of food it wouldn’t be enough to survive,” Greer said. “So whatever mechanisms there are to create higher abundances of food, they are potentially really important for a number of different organisms.”

The other members of the research team were Adam Boyette, Valerie Cruz, Kemal Cambazoglu, Luciano Chiaverano and Jerry Wiggert, all from the University of Southern Mississippi; Brian Dzwonkowski and Steven Dykstra, from the University of South Alabama; and Christian Briseño‐Avena and Bob Cowen, from Oregon State University.
The paper can be viewed HERE.

UGA Skidaway Institute develops cutting-edge microbial imaging laboratory

A team of researchers from the University of Georgia Skidaway Institute of Oceanography has received a $226,557 grant from the National Science Foundation to acquire state-of-the-art imaging equipment to investigate microorganisms from the tiniest viruses to larger zooplankton. The equipment will be housed in UGA Skidaway Institute’s new Laboratory for Imaging Microbial Ecology, or LIME.

Researcher Elizabeth Harvey leads the research team that also includes UGA Skidaway Institute scientists Julia Diaz, Marc Frischer, James Nelson and James Sanders.

UGA Skidaway Institute researchers Tina Walters, Marc Frischer and Karrie Bulski practice running zooplankton samples on the FlowCam, a new instrument that is part of LIME

UGA Skidaway Institute researchers Tina Walters, Marc Frischer and Karrie Bulski practice running zooplankton samples on the FlowCam, a new instrument that is part of LIME

The equipment will improve Skidaway Institute’s capability to conduct field and laboratory experiments by automating many viewing methods.

“Anyone who uses a microscope will tell you that it is both tedious and time consuming,” Harvey said. “This equipment will allow us to enumerate and analyze microbes and other planktonic organisms much faster, and will allow us to do more large-scale projects than we could in the past.”

Microscopic phytoplankton photogaphed in the LIME.

Microscopic phytoplankton photogaphed in the LIME.

Much of the equipment will also have imaging capability so researchers will be able to do more detailed measurements on the size and shape of the tiny organisms and how that might relate to the health of an ecosystem.

Marine microbes are an essential component of all marine ecosystems and they play central roles in mediating biogeochemical cycling and food web structure.

“They are the things that drive all other processes in the ocean,” Harvey said. “They play a really important role in the way nutrients, oxygen and carbon are cycled through the ocean. We care a lot about those processes because they impact our climate, fisheries and the ocean’s overall health.”

The benefits of LIME will be shared beyond Skidaway Institute’s science team. Harvey envisions it as a regional center for microbial imaging, available to any other researchers who need the capability.

“Anyone is welcome to come here and get trained to use them,” she said. “They just need to contact me and we can make arrangements.”

Some of the equipment is already in place, while other pieces have not been delivered. Harvey anticipates all the equipment being functional by mid-2017.

Letter from Jim Sanders

Dear Friends,

This is an exciting time for the University of Georgia’s Skidaway Institute of Oceanography and a critical moment in time for our ocean and its resources. Our faculty, staff and students are conducting world-class research, and we are making headway in understanding the processes that define the ocean and coastal ecosystems. Even after many years as the Institute’s director, I remain awestruck by the ingenuity and dedication of Skidaway’s scientists. Below, I highlight some of our recent efforts:

  • The National Science Foundation has just awarded Drs. Dana Savidge, Catherine Edwards and their colleagues funding to study the processes that drive water exchange (and the particles and organisms associated with the water) in the vicinity of Cape Hatteras.
  • Two new scientists have joined the Skidaway faculty: Drs. Elizabeth Harvey and Julia Diaz. Drs. Harvey and Diaz are examining how planktonic organisms interact with one another and how they influence their surroundings.
  • Dr. Aron Stubbins has been examining how changing climate, leading to loss of ice from glaciers and from permafrost, is altering carbon transport and utilization in Arctic ecosystems; while Dr. Cliff Buck and his colleague, Dr. Chris Marsay, are studying the flux of trace metals into and through that same region.
  • Many Skidaway scientists are focusing on processes and consequences of sea level rise, particularly its impacts on barrier islands and marshes, and how changes in salinity associated with increased inflow of ocean water into coastal rivers and creeks influences nutrient and carbon flows in coastal ecosystems.
  • Finally, in the coming year, state funds will help to repurpose the Institute’s iconic cattle show barn from the Roebling era into the Center for Coastal Hydrology and Marine Processes (CHAMP), with a focus on research and education directed toward understanding influences on coastal systems and the wise stewardship of coastal resources.

These examples underscore the importance of our work, and they are just a small part of the quiet, yet meticulous way we pursue our mission to advance understanding of coastal and marine environments.

That mission, in turn, is part of Skidaway’s larger vision — to continue as an international leader in interdisciplinary ocean research, developing and promoting collaborations in science, education, policy and public service. We work with scientists from around the nation and around the globe, and with students and scientists from elsewhere who are drawn to Skidaway to conduct their research. The international science community is well aware of Skidaway Institute’s research and its scientists. Our reputation has been built over nearly 50 years by quiet, yet fundamental, research and education.

Our success and reputation hasn’t happened alone, however; indeed, our efforts have been aided by the support of many. It has been your contributions to the Associates of Skidaway Institute that have allowed me to invest in valuable research and education pilot projects, and to support students, staff and faculty in their efforts. With your help, we have been able to reach out to the community to help with issues facing coastal resources; to support undergraduate and graduate students who wish to study here at the Institute; and to provide promising young faculty members with additional resources to answer urgent research questions. Please consider sending a contribution to support our future efforts — today!

I am very proud to have been a small part of Skidaway’s history, first as a graduate student in the 1970s, and more recently as its director. I am stepping down as executive director of Skidaway at the end of June, and assuming my faculty position. I do so with mixed feelings, because Skidaway Institute of Oceanography and its faculty, staff and students have been so important to me. However, it is time for new leadership, with new ideas, to drive Skidaway Institute of Oceanography to greater heights. That will ensure that we continue to attain our mission and vision; that we remain known for world-class science; and that we succeed in our efforts to create a more knowledgeable citizenry capable of promoting sound utilization of natural coastal and marine resources while capitalizing on coastal economic opportunities. Dodie and I will continue to support the Institute through the Associates, and I hope that you will continue to do so, as well. Your regular contributions are a critical component necessary for our success.

Thank you for everything that you have done to help me over the past 15 years.

Jim

Editor’s Note: The  Associates of Skidaway Institute is a branch of the University of Georgia Foundation, a 501(c)3 non-profit corporation. Most donations are tax-deductible. Donations to ASI are reserved for use by UGA Skidaway Institute. Donations can be made online by credit card. Click this link for additional information, membership levels and a link to a donation page: http://www.skio.uga.edu/?p=aboutus/asi.

Donations can also be made by check to:

Associates of Skidaway Institute

10 Ocean Science Circle

Savannah, GA 31411

 

Diaz joins UGA Skidaway Institute faculty

Marine biogeochemist Julia Diaz has joined the faculty of the University of Georgia Skidaway Institute of Oceanography as an assistant professor.

OLYMPUS DIGITAL CAMERAOriginally from Alpharetta, Ga., Diaz was graduated summa cum laude from the University of Georgia with a B.S. in biology and went on to earn her Ph.D. in earth and atmospheric sciences from Georgia Tech. She conducted postdoctoral research at Harvard University and the Woods Hole Oceanographic Institution.

Diaz’s research examines how the chemistry and microbiology of the oceans shape each other and, ultimately, how this interaction affects ecosystem health from local to global scales. She is currently studying the chemical basis of coral bleaching, a devastating consequence of global warming which threatens coral reefs worldwide.

“I also study how microscopic plantlike organisms acquire the chemical nutrients they need to survive in extremely nutrient-poor areas of the ocean and how these processes may affect ecosystem structure and climate,” she said. “My research has taken me all over the world, from Antarctica to the Caribbean, and now I am very excited to explore new scientific questions along our beautiful coast and offshore waters.”