Category Archives: research

Marine Extension pilots program to grow individual oysters off Georgia coast

By Kelly Simmons

UGA Marine Extension is poised to launch the state’s first oyster hatchery, bringing the popular shellfish back to the Georgia coast after more than 50 years, and diversifying the state’s aquaculture industry.

The shellfish research lab on Skidaway Island began piloting oyster growth last year, using funding from the Georgia Department of Natural Resources (DNR) to give wild spat—oyster seed—and advice to aquaculturists in the area who have DNR approval to farm and harvest in specific areas along the coastal rivers and tributaries. DNR funding also paid to outfit part of the shellfish laboratory to be used as a hatchery to hire a hatchery manager.hatchery_flyer-fpo-678x394

“We hope eventually to attract a commercial hatchery to supply large amounts of seed,” said Thomas Bliss, director of the Marine Extension Shellfish Research Laboratory on Skidaway Island. “We can focus here on research.”

So far, 10 growers have cultivated the seedlings, protected in mesh bags on racks in shallow water. The first full size single shell oysters are expected to be ready for harvest this fall.

By summer, some were already 1.75 inches long, about a quarter inch smaller than the legal size for commercial harvesting in Georgia, said Bliss. The survival rate was high—about 99 percent had survived so far.

John Pelli, who owns the Savannah Clam Co., was among the local aquaculturists who agreed to try raising oysters. On a windy but sunny day in March, he was on his skiff, moving his mesh bags of shells from one location to another. He hopes to produce about 300,000 oysters a year to supply retailers locally and across the state.

In the early 1900s, Georgia was the largest wild oyster producer in the country, harvesting more than eight million pounds of oyster meat in 1908. By the 1940s and 1950s, however, production declined significantly. In the 1960s, canneries built to process the native oysters had closed.

In the 1980s, marine extension again began to explore opportunities in aquaculture. Clams, which are easier to grow, were first. In 2013, Georgia clammers harvested more than 105,000 tons of clams, up from 54,000 tons just five years earlier and 4.2 tons in 1993.

Clams are much easier to grow because you can buy seed from other states. Georgia doesn’t allow oyster spat from outside the state because it could contain disease.

To grow the spat, Bliss and hatchery manager Justin Manley have to recreate the natural spawning process of oysters inside tanks of water. Once the larvae is formed it attaches to a small piece of shell in the tank. The baby oysters, called spat, can be transplanted to other areas to grow into adults. They may be harvested when they are two inches long.

This year, Bliss says they’ll produce about 100,000 to 200,000 seeds, or spat. By 2020, he hopes that will increase to five to eight million.

The payoff would be worth it. The 100,000-500,00 oysters grown in 2015 have an estimated dock value of $75,000. Five to eight million would bring in about $1.6 million.

“Everybody’s crazy about single oysters,” Pelli said. “People are willing to pay good money for them.”

UGA Marine Extension pilots new education programs that investigate sustainable oyster aquaculture

The University of Georgia Marine Extension is piloting a new program for visiting school groups in the fall of 2015. The overall project, funded by the Landings Landlovers Inc., will provide hands-on educational experiences for approximately 190 students and the general public in a unique setting.

The UGA MAREX Shellfish Research Laboratory has developed an oyster hatchery, the first in the state of Georgia, to support a growing oyster aquaculture industry. They have created a program that will expose participants to sustainable aquaculture practices and provide enrichment activities that emphasize the ecological and economic importance of oyster reef communities and the important role that oyster hatcheries play in the sustainability of this important shellfish species.

Skidaway Institute participates in worldwide ocean snapshot

Scientists at the University of Georgia Skidaway Institute of Oceanography joined researchers around the globe in a worldwide Ocean Sampling Day on Sunday, June 21, the summer solstice.

This was the second year Skidaway researchers have participated in the Ocean Sampling Day event. The first was conducted last year, also on the summer solstice. The event focuses on simultaneous sampling of microbes in ocean, coastal and Great Lakes waters.

This year, 191 marine research locations—from the Rothera Research Station in Antarctica to Göteborg University in Sweden—participated. The sampling program supports international missions to provide

“It’s a global effort to take a snapshot of microbes across the world’s oceans at the same time, on the same day, in this case, the summer solstice,” said Skidaway Institute professor Marc Frischer.

The Skidaway Institute team transfers a water sample from the Skidaway River during Ocean Sampling Day

The Skidaway Institute team transfers a water sample from the Skidaway River during Ocean Sampling Day

Frischer cited the significance of the project by describing microbes as the “engines of our planet” and said half the oxygen in the atmosphere is produced by microbes in the ocean.

Skidaway Institute scientists collected samples at two locations. One team collected and processed samples from the Skidaway River estuary immediately adjacent to the Skidaway Institute campus. That also served as part of an ongoing water-quality monitoring program Skidaway Institute has supported for more than 25 years. A second group teamed up with scientists from the National Oceanic and Atmospheric Administration Gray’s Reef National Marine Sanctuary and collected samples from Gray’s Reef. The 14,000-acre marine sanctuary is located about 17 miles off the Sapelo Island coast.

“We helped Gray’s Reef by collecting and processing their samples in the way they needed to be done,” Frischer said. “You really need a laboratory for that, and we were able to provide that.”

One goal of the global project is to note the commonalities and the differences among the microbial communities around the globe. Some of those differences were seen just in the samples collected at Gray’s Reef and at the Skidaway campus, two sites only 40 miles apart.

Grad student LaGina Frazier lowers a disc used to measure turbidity into the water off the UGA Skidaway Institute dock.

Grad student LaGina Frazier lowers a sensor into the water off the UGA Skidaway Institute dock.

“We generally observe a larger number of smaller organisms out in the ocean, which makes sense because they are adapting to a system with lower nutrients,” Frischer said. “We also saw a different kind of photosynthetic organisms since there is much more light available in the ocean compared to rather turbid waters in our estuary.”

Much of the fieldwork at both Skidaway Institute and Gray’s Reef was handled by undergraduate college students gaining research experience at Skidaway Institute this summer. These included students from UGA and Savannah State University’s Research Experience for Undergraduates program.

All samples and data were sent to Bremen, Germany, for DNA extraction and sequencing to ensure maximum comparability. The resulting data will be made publicly available as soon as quality checks are finished. These cumulative samples, related in time, space and environmental parameters, will provide insights into fundamental rules describing microbial diversity and function and contribute to the blue, or oceanic, economy through the identification of novel, ocean-derived biotechnologies.

Ocean Sampling Day was jointly coordinated by Jacobs University in Bremen, Germany, and the University of Oxford in the U.K. and is part of the European Union-funded Ocean of Tomorrow research project Micro B3.

“It is really important to have a global perspective,” Frischer said. “We are glad we can participate in what they are now calling “gigascience” where we are collecting a snapshot from all over the world. It is amazing!”

Additional information on the global Ocean Sampling Day project is available at www.microb3.eu/osd.

A video of Ocean Sampling Day is available on the Skidaway Institute YouTube Channel at:

https://www.youtube.com/watch?v=5c8JuzvLUH8

Harvey joins Skidaway Institute faculty

OLYMPUS DIGITAL CAMERA

Biological oceanographer Elizabeth Harvey has joined the faculty of the UGA Skidaway Institute of Oceanography as an assistant professor.

Harvey received her bachelor’s degree in marine science from the University of Maine and a master’s in environmental science from Western Washington University. She earned her doctorate in oceanography from the University of Rhode Island. Immediately prior to joining Skidaway Institute, she completed a post-doctoral fellowship at Woods Hole Oceanographic Institution.

Harvey’s research focus is on the mechanisms of mortality in the planktonic environment in the ocean and how that influences food web structure and biogeochemical cycling.

UGA Skidaway Institute produces informational video on black gill in Georgia shrimp

The UGA Skidaway Institute of Oceanography has produced an informational video to educate the public about black gill, a condition affecting Georgia shrimp, and the institute’s research into the problem.

Black gill is a mysterious condition affecting shrimp from Florida to North Carolina. A number of shrimpers have blamed black gill for their reduced harvests.

Almost nothing was known of the condition until the UGA Skidaway Institute began looking into the issue in early 2014. Since then, researchers have learned much about the condition, but much is still unknown. This video provides background on the condition and the results of the investigation thus far.

The video can be viewed below or accessed through the UGA Skidaway Institute Web site at http://www.skio.uga.edu.

The black gill research is funded by Georgia Sea Grant. The video was produced in cooperation with UGA Marine Extension, the university’s Office of Public Service and Outreach, Georgia Sea Grant and the Georgia Department of Natural Resources.

Scientists work to predict 22nd century look of the Georgia coast

The Georgia coast is characterized by a complex system of barrier islands, salt marshes, estuaries, tidal creeks and rivers. As the sea level rises over the next century, that picture will change. UGA Skidaway Institute of Oceanography scientist Clark Alexander is working on a project to predict how the coast may look 25, 50 and 100 years from now.

Predictions of sea level rise over the next century vary from the current rate of roughly 30 centimeters—about a foot—to as much as two meters—about 6 feet. Although scientists disagree on the ultimate height of the rise, they all agree that salty water is moving inland and will continue to do so for the foreseeable future, Alexander said. Here on the Georgia coast, islands will become smaller or disappear entirely; salt marshes will be inundated by the rising waters and migrate toward the uplands; and some low-lying uplands will become salt marshes.

To predict the extent of these changes, scientists are using the predictive Sea Level Affecting Marshes Model, or SLAMM, which was originally developed for the U.S. Fish and Wildlife Service.

SLAMM predicts the effects of future sea level rise based on two key inputs: an elevation mapping of the coastal zone and salinity profiles up the rivers and waterways. Salinity and elevation are two key factors that determine the type of plants, and thus habitat, that will be present at any particular location.

“As the sea level rises, the fresh water in rivers will be pushed further upstream,” Alexander said. “The brackish and salty water will also move up, and the salt marshes will expand.”

Funded by a Coastal Incentive Grant from the Georgia Department of Natural Resources Coastal Management Program, Alexander and his team have been studying the five key river systems along the coast and numerous salt marsh estuaries. Salinity along the coast is dominantly affected by river discharge into the estuaries, so the team has been conducting its surveys during both winter—high river flow—and the summer—low river flow—conditions.

“We start at the mouth of a river about an hour before high tide and then we follow that high tide up the river, mapping the surface salinity along the way,” Alexander said. “We find the maximum inshore intrusion of salinity at high tide during a spring tide. That is the location that defines the boundary between the brackish marshes and the freshwater marshes.”

Researcher Mike Robinson prepares the adjusts the salinity sensors, while fellow researcher LeeAnn DeLeo drives the boat.

Researcher Mike Robinson prepares the adjusts the salinity sensors, while fellow researcher LeeAnn DeLeo drives the boat.

In addition to tracking surface salinity, the researchers also stop periodically and measure the salinity throughout the water column to determine if what they measure at the surface is similar to what is present near the bottom. They lower a device that measures the water conductivity (which is related to salinity), temperature and depth from the surface to the bottom. Also equipped with GPS capability, the device automatically captures the location of every water column profile.

Researcher LeeAnn DeLeo lowers a CTD monitor through the water column.

Researcher LeeAnn DeLeo lowers a CTD monitor through the water column.

In many coastal regions, denser, saltier water tends to sink to the bottom and the lighter, fresher water remains near the surface. However, because of the energy produced by Georgia’s wide tidal range, the team found that most of the water on the Georgia coast is well mixed and doesn’t show up as layers.

The second part of the project is to fine-tune existing elevation data. Scientists have an extensive set of elevation information from airplane-mounted Light Detection And Ranging systems. LIDAR is usually very accurate, except in marshes, because it cannot see through the vegetation to the actual ground surface.

“You might be off by 30 centimeters or more, and in a low-lying, flat area like our coastal zone, that can make a big difference in predicting where the water will flood,” Alexander said.

The Skidaway Institute team is working with Georgia Southern University scientist Christine Hladik on a fix. By comparing LIDAR data with the true elevation in a particular area, Hladik observed that the LIDAR error varied according to the type of plants growing there. For example, if the area contained the dense, tall spartina, the error was large and, on average, a consistent number of centimeters. If the region was covered with a different, less-dense-growing salt marsh plant, like short spartina, the error was smaller but also consistent.

“She discovered that if you know what type of vegetation is covering a section of marshland, you can plug in the correction and come back with an accurate measure of the elevation,” Alexander said.

The research team observed the vegetation and measured the true ground level at 400 randomly selected points throughout coastal brackish and salt marshes in Georgia. That information and knowledge of plant types is being used to correct the existing marsh elevations.

The research team will complete one more set of river surveys before the project ends in September. Alexander hopes to obtain continued funding to use this newly acquired elevation and salinity data in a fresh SLAMM model run for the Georgia coast, using all the high-resolution data developed in this project.

“We should be able to look out as much as 100 years in the future and see where the different wetlands will be by then,” he said. “That way we can plan for marsh sustainability, retreat and sea level rise.”

Skidaway Marine Science Day to feature Georgia’s first oyster hatchery

A close-up look at Georgia’s first oyster hatchery will be one of the featured attractions at Skidaway Marine Science Day on Saturday, Oct. 24. The campus-wide open house will be held from noon to 4 p.m. on the University of Georgia’s Skidaway Island campus, located on the north end of the island.

The oyster research team will provide behind-the-scenes tours of the new hatchery, which is a project of the UGA Marine Extension’s Shellfish Laboratory and Georgia Sea Grant, units of UGA Public Service and Outreach. It is hoped the oyster hatchery will make the Georgia oyster industry more durable, contribute to aquaculture diversification and elevate one of Georgia’s best-kept culinary secrets from the backyard roast to the tables of the finest restaurants from Savannah to Atlanta and beyond.

The hatchery tour is just one feature of a lengthy program of activities, displays and tours making the annual event one that attracts thousands of visitors each year.

The UGA Skidaway Institute of Oceanography’s 92-foot ocean-going Research Vessel Savannah will be open for tours and will exhibit science displays.

Tour the Skidaway Institute’s ocean-going Research Vessel Savannah.

Tour the Skidaway Institute’s ocean-going Research Vessel Savannah.

Elsewhere on campus, Skidaway Institute will present a variety of marine science exhibits and hands-on science activities, including the ever-popular Microbe Hunt and Plankton Sink-Off. Skidaway Institute scientists will present a series of short, informal talks and question-and-answer sessions on current scientific and environmental issues.

The UGA Aquarium, operated by UGA Marine Extension, will be open to visitors with no admission fee. Aquarium educators will offer visitors an afternoon full of activities including a hands-on reptile exhibit, behind-the-scenes peeks of the aquarium, fish feedings and microscope investigations.

The Reptile Experience fascinates nature lovers of all ages.

The Reptile Experience fascinates nature lovers of all ages.

A brand new touch tank exhibit will allow guests of all ages to get up close and personal with common coastal invertebrates.

Touch tanks allow visitors to experience sea creatures   up close.

Touch tanks allow visitors to experience sea creatures up close.

Gray’s Reef National Marine Sanctuary will offer visitors the experience of using the tools of the trade. They can explore an underwater reef with a remotely operated vehicle and find out how youth can participate in Savannah’s own MATE ROV competition. ROVs are underwater robots used on NOAA research vessels worldwide and are crucial for data collection in marine environments.

"Fly" an underwater ROV with Gray's Reef.

“Fly” an underwater ROV with Gray’s Reef.

A photo booth will allow visitors to visualize themselves SCUBA diving at Gray’s Reef or in other exotic settingsand will be able to post their pictures on social media.

Along with the campus organizations, Skidaway Marine Science Day will also include displays, demonstrations and activities from a wide range of science, environmental and education groups, such as The Dolphin Project, the Georgia Sea Turtle Center and The Nature Conservancy. Georgia Power will be on hand to provide information on the upcoming wind turbine project planned for the Skidaway Institute campus.

All activities at Skidaway Marine Science Day are free. For additional information, call 912-598-2325, or see http://www.skio.uga.edu.

UGA Skidaway Institute scientist shares Gulf oil spill research grant

UGA Skidaway Institute of Oceanography scientist Catherine Edwards is part of a research team that has received an $18.8 million grant to continue studies of natural oil seeps and track the impacts of the BP/Deepwater Horizon oil spill in the Gulf of Mexico ecosystem.

A satellite view of the Deepwater Horizon oil spill

A satellite view of the Deepwater Horizon oil spill

Known as ECOGIG-2 or “Ecosystem Impacts of Oil and Gas Inputs to the Gulf,” the project is a collaborative, multi-institutional effort involving biological, chemical, geological and chemical oceanographers led by the University of Georgia’s Samantha Joye. The research team has worked in the Gulf since the weeks following the 2010 Macondo well blowout.

The three-year, $18.8 million ECOGIG-2 program was funded by the Gulf of Mexico Research Initiative, or GoMRI.

“Our goal is to better understand the processes that have affected the oil spill since 2010,” Edwards said. “How the droplets were dispersed? Where the oil went? How it was taken up by small microbes and also the effects on animals further up the food chain?”

Edwards’ role in the project is to use autonomous underwater vehicles, also called “gliders,” to collect data on conditions around the spill site. Equipped with sensors to measure characteristics such as depth, water temperature, salinity and density, the gliders can cruise the submarine environment for weeks at a time, collecting data and transmitting it back to a ship or a shore station.

Skidaway Institute scientist Catherine Edwards adjusts a glider’s buoyancy with graduate students Sungjin Cho and Dongsik Chan.

Skidaway Institute scientist Catherine Edwards adjusts a glider’s buoyancy with graduate students Sungjin Cho and Dongsik Chan.

“We want to understand the ocean currents—how they change over time and how they change in depth,” Edwards said. “Surface measurements give us a two-dimensional picture of the ocean. Glider data in the vertical provides more valuable information for more fully understanding ocean currents and how they arise.”

The gliders will operate in conjunction with shipboard instruments and also independently. One advantage of using the gliders is they can operate during storms and rough weather, when it may not be possible to use ships. Edwards said shipboard work doesn’t always give a full picture of ocean dynamics simply by the fact that they can only go out when the weather is reasonably clear.

When working in conjunction with research ships, the gliders can provide additional observations, significantly improving the quality of the data set. The gliders also report dissolved oxygen concentrations and optical measurements of chlorophyll and organic matter, and may also be used as a test vehicle for new instruments in development.

Edwards will use “GENIoS,” a new software package, to help navigate the gliders. GENIoS uses high-resolution forecast models of wind and ocean currents, along with information from the glider itself, to calculate the optimal path for the gliders. This will improve the quality of the scientific data collected.

GENIoS is a collaboration among Edwards, Fumin Zhang from the Georgia Institute of Technology and their two Georgia Tech Ph.D. students, Dongsik Chang and Sungjin Cho. GENIos has been tested for more than 210 glider-days on the continental shelf off Georgia and South Carolina. This experiment will be its first test in the Gulf of Mexico.

Edwards also hopes to use this project to test the gliders as platforms for new, experimental sensors developed by other members of the ECOGIG-2 team.

Others involved in ECOGIG-2 include UGA marine sciences faculty Christof Meile, Renato Castelao and Catherine Edwards as well as Annalisa Bracco and Joe Montoya of Georgia Tech.

For additional information, contact Catherine Edwards at (912) 598-2471 or catherine.edwards@skio.uga.edu.

Gray’s Reef NMS organizes FareWhale Festival

Gray’s Reef National Marine Sanctuary will present the second annual FareWhale Festival on Saturday, March 21, from noon to 4 p.m. at the Tybee Island Pier and Pavilion.

Parade Mag Ad 2015 BIG

“We want people to come out and celebrate the end of the calving season for the critically endangered North Atlantic right whale as they leave our coastal waters and make their way north off the coast of New England near Stellwagen Bank National Marine Sanctuary,” said Gray’s Reef’s Abbigail Murphy.

Visitors can experience the trials and tribulations these whales encounter in the right whale obstacle course; learn more about whales from experts and educators in the field; and enjoy live music and artwork from local artists. Other activities will include a guided beach walk on the shores of Tybee and a beach cleanup held from 10 a.m.-12 p.m.

More information is available at:
http://graysreef.noaa.gov
Contact: abbigail.murphy@noaa.gov

 

Shrimpers, others join UGA Skidaway Institute Black Gill research cruise

UGA Skidaway Institute of Oceanography scientists are studying a condition in shrimp found along the Southeast Coast known as Black Gill. As part of this effort, a group that included UGA Skidaway Institute scientists and representatives from Georgia Sea Grant, UGA Marine Extension, Georgia DNR, the shrimping industry and researchers from North and South Carolina joined a one-day research cruise on board the R/V Savannah on October 9. The focus of the cruise was to collect shrimp for the Black Gill research project, and also to give the various groups the opportunity to exchange ideas. This account of the project comes from UGA Skidaway Institute scientist and cruise-organizer Marc Frischer.

We had 20 people on board (not including the ship’s crew), representing three states (Ga. S.C. and N.C.) and interests from the industry, management, research, and education/outreach communities. Although sometimes the conversations were outside of my comfort zone, I found the discussions and interactions that I had interesting, significant and useful. I found particularly interesting the perspectives from some of the professional shrimpers who were onboard made it clear to me that a research priority should be investigating the relationship between shrimp mortality in the field and the incidence of Black Gill. Discussions with the management community also provided me new insights into the difficulties we are facing with management and regulation. Conversations with those charged with communicating with the broader public remind me to choose words carefully to avoid misunderstanding.

A shrimp with the Black Gill condition clearly evident.

A shrimp with the Black Gill condition clearly evident.

In terms of the science, the day was largely successful despite the very low shrimp catches. Our priority was to collect enough live shrimp to conduct experiments to investigate black gill transmission and to explore the effect of ciliate infection on molting frequency. Although there were not many shrimp caught, we caught enough to conduct our planned experiments, and we were able to bring live shrimp into our facilities with almost no mortality. Utilizing the relatively large R/V Savannah and being able to dock within feet of our labs made this possible.

Skidaway Institute professor Marc Frischer examining a shrimp.

Skidaway Institute professor Marc Frischer examining a shrimp.

Thanks goes to the director of the Skidaway Institute of Oceanography (Jim Sanders) for making the vessel available to us. Cost for the ship is not covered by funding provided by Georgia Sea Grant and was provided as matching funds by the Institute.

Experiments got underway immediately upon our return and will continue for the next several weeks. If anyone is interested and wants to visit the lab for an update you are welcome to do so.

DNR's Pat Geer and Sea Grant's Jill Gambill sort through the marine life caught in a trawl.

DNR’s Pat Geer and Sea Grant’s Jill Gambill sort through the marine life caught in a trawl.

In addition to collecting live specimens, we were able to collect and preserve samples for a large variety of other analyses that will contribute to our identification of the Black Gill agent and to understanding its impact on shrimp. Several of the samples we collected are now on their way to various labs around the world where researchers with expertise beyond ours will study them.

Also, for the first time, we, collected water and sediments to be examined using our novel molecular-based diagnostic tools that are just now coming online. These studies will form the basis of a student project and thus generate both new information and new talent.

The team from the October Black Gill cruise.

The team from the October Black Gill cruise.

Unfortunately, because we were not able to catch more shrimp, we were not able to quantify the prevalence of Black Gill along the transect we sampled (offshore Wassaw Island, Wassaw Sound, and the Wilmington and Skidaway Rivers). However, this is a task valiantly undertaken by the GA DNR who had just visited the area in September and will be at it again. However, in addition to observing that catches were low everywhere, we were able to estimate a prevalence in the neighborhood of 50 percent. Except for offshore where we only caught one shrimp and it had black gill (so 100 percent). Two insights from this experience — first, our observations agree very well with DNR’s estimates and it is clear that we are probably not sampling sufficiently. Second — engaging the fishing community in this effort, if we can do so in a scientifically sound manner, will be truly helpful.